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Part # 15035786 Rev. D
Introduction 70
Rapid Run Sequencing Workflow 72
Run Types for Rapid Run Chemistry 73
Pre-Run Volume Check 75
Enter Run Parameters 76
Load and Prime Reagents 81
Load a Flow Cell 90
Monitor the Run 96
Chapter 5 Post-Run Procedures 97
Introduction 98
Unload and Weigh Reagents 99
Perform a Maintenance Wash 100
Perform a Water Wash 104
Switch Sequencing Modes 106
Idle the Instrument 108
Shut Down the Instrument 109
Chapter 6 Real-Time Analysis 111
Introduction 112
Real-Time Analysis Overview 113
Monitor Run Metrics 115
Real-Time Analysis Workflow 117
Sequencing Output Files 121
Output Folder Structure 123
Tile Numbering 125
Thumbnail Images 126
Chapter 7 Troubleshooting 127
Introduction 128
Possible Run Setup Problems 129
Stagger Runs on Flow Cell A and Flow Cell B 130
Perform a Fluidics Check 131
BaseSpace is Unavailable 132
Stop and Resume a Run 133
Pause a Run 136
Primer Rehybridization 137
Index 139
Technical Assistance 143
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