
Perform a Water Wash
HiSeq 2500 System User Guide
105
6 Remove the waste tubing for the appropriate flow cell from the waste container. Do not
include the waste tubing for the opposite flow cell, or the tubing from the condensation
pump.
7 [For high output modes] Bundle the waste tubing with parafilm, making sure to keep
all of the ends even. Place the bundled tubing ends into a 250ml bottle.
8 [For Rapid Run mode] Place the ends of tubes 4 and 5 into an empty container. Place
the end of all of the other tubing into a bottle of clean water to prevent air from being
introduced into the syringe pumps.
9 Select Next to start the water wash.
Positions Approximate Run
Time
8 SBS positions 20minutes
8 SBS positions and 10 paired-end positions 60minutes
[Rapid Run mode] 8 SBS positions, 10 paired-end positions, and 1 library
loading position
10minutes
10 When the wash is complete, measure the delivered volume and record it on the lab
tracking form.
Positions Delivered
Volume
8 SBS positions 32ml
8 SBS positions and 10 paired-end positions 72ml
[Rapid Run mode] 8 SBS positions, 10 paired-end positions, and 1 library
loading position
9.5 ml per lane
11 Unwrap the waste tubing and return the tubing to the waste bottle.
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