
Perform a HiSeq v4 Run
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Part # 15035786 Rev. D
allow the software to create the recipe from the run parameters entered.
Sample Sheet Screen
Sample sheets are optional unless you use BaseSpace to perform data analysis or perform
an indexed run.
1 Select Browse to navigate to the sample sheet location.
2 Select Next.
NOTE
HiSeq Control Software v2.2 allows a different indexing scheme in each lane.
Reagents Screen
The Reagents screen records information about reagent kits used for the run. The reagent kit
ID (barcode number beginning with RGT) is used to determine reagent kit type and run
mode compatibility.
1 Scan or enter the SBS reagent kit ID.
2 For paired-end runs, scan or enter the reagent kit ID for paired-end cluster kit.
3 Select the SBS reagent kit for the run:
• Select 250 Cycles for a 250 cycle kit. Cycles remaining defaults to 275.
• Select 50 Cycles for a 50 cycle kit. Cycles remaining defaults to 74.
• Select Custom for a partial kit or multiple 50-cycle kits. In the Cycles Remaining
field, enter the number of SBS cycles that reagents are expected to last.
NOTE
For partial kits, the software counts down the number of cycles entered. When the
cycles are low, the software prompts you to load fresh reagents.
4 Select Prime SBS Reagents to prime reagents before starting a run. Always prime
reagents before loading a new flow cell.
5 Select Next.
Review Screen
1 Review the run parameters on the Review screen.
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