
HiSeq 2500 Software
HiSeq 2500 System User Guide
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} Exit—Closes the control software interface.
Menu Options Window
The Menu Options window provides settings to define the run ID template, default folder
locations, a LIMS server, user name, and password, and whether to send instrument health
information to Illumina.
Figure 9 Menu Options Window
} Run ID Template—The naming convention used to generate run folder names.
} Default Output Folder—The default output folder for runs on flow cell A. This location
can be changed on a per run basis.
} Default Output Folder2—The default output folder for runs on flow cell B. This
location can be changed on a per run basis.
} Default Temp Folder1—The location to which temporary files are written during a
run.
} Run Setup Folder—The location of LIMS sample forms.
} LIMS Server—The server name for interactions with supported Illumina LIMS.
} LIMSUser Name—The user name used when authenticating to Illumina LIMS.
} LIMSPassword—The password used when authenticating to Illumina LIMS.
} Send instrument health information to Illumina to aid technical support—Permits the
instrument to send information to BaseSpace for each run. All information remains
confidential. Illumina recommends enabling this feature.
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