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Perform a TruSeq v3 Run
66
Part # 15035786 Rev. D
Load Reagents for Read 2
After completion of Read 1 and any index reads, load paired-end reagents for Read 2
resynthesis and freshly prepared ICB for Read 2.
Load Paired-End Reagents
1 Record the weight of each reagent on the lab tracking form.
2 Make sure that the paired-end rack is not in use on the opposite flow cell for Read2
resynthesis, Index 1 (i7) Read preparation, or Index 2 (i5) Read preparation.
3 Raise the sippers for the paired-end reagent rack using the following motion:
a Pull the handle towards you and raise the handle.
b Release the handle into the slot on the top end of the groove. Make sure that the
handle rests securely in the slot.
4 Slide the reagent rack out of the reagent compartment using the rack handle.
5 Remove the caps from each reagent tube.
6 Place each of the reagent tubes onto the rack in the associated numbered positions.
Position
Reagent Description
10
RMR Resynthesis Mix
11
LMX2 Linearization Mix 2
12
BMX Blocking Mix
13
AMX2 Amplification Mix 2
14
APM2 AMX2 Premix
15
AT2 100% Formamide
16
HP7 or HP11 Read 2 Sequencing Primer
18
HP3 Denaturation Solution
19
HT2 Wash Buffer
Table 9 Paired-End Reagent Positions
NOTE
For dual-indexed paired-end runs, RMR is loaded with indexing reagents before starting
the run. For single-indexed or non-indexed runs, RMR is loaded with paired-end
reagents.
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